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Doctor Side Practice Tax Guide

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Van Gage
2025-09-11 17:35 15 0

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A growing number of doctors add side practices such as consulting, teaching, telemedicine, or a small clinic to their primary work. Even though side practices may raise income, they add extra layers of tax complexity. Good planning can minimize tax liability, safeguard cash flow, and ensure compliance with federal and state laws. This is a practical guide to navigating tax planning for doctors with side practices.

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Why Side Practices Are Important A side practice transforms the tax nature of your earnings. Income that would otherwise be taxed as salary becomes self‑employment income subject to the self‑employment tax (Social Security and Medicare). Combining W‑2 income from your main employer with 1099 income from a side practice results in a hybrid tax scenario. Each income type comes with distinct deduction rules, reporting needs, and timing factors.


Key Tax Concepts for Doctors 1. SEAT – 15.3% on net self‑employment income. 2. Qualified Business Income (QBI) deduction – up to 20% of qualified business income under Section 199A, subject to limitations. 3. Corporate Tax Rates – if you incorporate, you may benefit from lower corporate rates and distinct liability. 4. State taxes – numerous states tax medical earnings differently; some provide special exemptions or reduced rates for medical professionals.


Choosing the Right Entity


Schedule C Sole Proprietorship

Easiest to set up; income reported on Form 1040 Schedule C. All expenses are deducted on the same schedule; no separate corporate filing. Self‑employment tax applies to the net profit.


Limited Liability Company

Single‑member LLC treated as a disregarded entity; same as sole proprietorship for tax purposes unless you elect corporate taxation. A multi‑member LLC files Form 1065, with each member receiving a K‑1. Delivers liability protection without corporate formalities.


S‑Corp

Set a reasonable salary (W‑2) and take the surplus as shareholder distributions. The salary is subject to payroll taxes, while distributions are exempt from SE tax. Needs payroll setup, quarterly payroll tax filings, and adherence to IRS reasonable‑compensation rules.


C Corporation

A distinct legal entity; profits taxed at the corporate level (21% federal) and again upon dividend distribution. Useful for larger side practices or when planning to reinvest profits. Requires detailed corporate governance and annual meetings.


Best Practice: Most physicians find an S‑Corp or LLC with an S‑Corp election strikes the right balance of simplicity, liability protection, and tax efficiency. Nonetheless, the choice relies on revenue, number of staff, and future goals.


Tax‑Deductible Expenses

Lease

Utilities, Internet, and Phone

Liability Insurance for Professionals

Continuing Medical Education and Licensing Fees

Equipment and Supplies (e.g., medical instruments, computers)

Advertising and Marketing costs

Depreciation of Capital Assets

Premiums for Health Insurance when self‑insured

Travel and Meals related to business (50% meals deduction)

Home Office Deduction if you have a dedicated space for patient care or admin tasks.


Note: All expenses must be ordinary, necessary, and directly connected to the side practice. Document everything with detailed records, receipts, and a mileage log if you claim a home office or vehicle deduction.


Paying SE Tax on Time

  • If your side practice yields $1,000 or more in SE tax, quarterly estimated payments (Form 1040‑ES) are required.
  • Employ the safe‑harbor rule: pay 90% of prior year’s tax or 100% of current year’s tax (110% if AGI exceeds $150,000).
  • Automating payroll for an S‑Corp lowers the chance of underpayment penalties.

Qualified Business Income Deduction

  • QBI permits a 20% deduction on qualified business income from a pass‑through entity.
  • Doctors with higher incomes encounter limits: wage and capital caps, and the 20% ceiling.
  • Analyzing total income and side practice type is vital to maximize the deduction.

Health Insurance & Retirement Planning

  • Premiums paid by self‑insured doctors are fully deductible from gross income.
  • Establish a Solo 401(k), SEP IRA, or defined‑benefit plan to defer income and reduce taxable wages.
  • Contributions to these plans are limited by IRS rules; a financial advisor can help you stay within those limits.

Documentation and Recordkeeping

  • Separate bank accounts for primary practice and side practice.
  • Maintain a detailed ledger for all income and expenses.
  • Use accounting software tailored for medical practices to track reimbursable items, write-offs, and tax documents.
  • Keep records for a minimum of seven years in case of audit.

State & Local Considerations

  • States such as Texas, Florida, and Nevada lack state income tax, easing your compliance.
  • States such as California and New York impose extra taxes on medical earnings.
  • Look into local licensing fees, business taxes, and health department permits that could apply.

Timing Approaches

  • Defer income: Move large invoice receipts to the following year if permitted, lowering current year tax.
  • Accelerate deductions: Pay rent or buy equipment before year‑end to boost deductions.
  • Use a cash‑basis entity to better match income with expenses.

Hiring Workers or Contractors

  • Hiring employees triggers payroll taxes, benefits, and labor law compliance.
  • Independent contractors (1099) can reduce payroll burden but increase audit risk.
  • Hire a qualified tax professional to classify workers correctly and dodge penalties.

Working with a Tax Professional

  • A CPA or tax attorney with experience in medical practice tax matters can help you choose the right entity, optimize deductions, and ensure compliance.
  • Work with a professional for quarterly estimates, payroll setup, and audit defense.
  • Consistently evaluate your tax strategy.

Common Pitfalls to Avoid

  • Merging personal and business expenses within a single bank account.
  • Not maintaining detailed mileage logs for vehicle use.
  • Underestimating self‑employment tax and 法人 税金対策 問い合わせ missing quarterly payments.
  • Ignoring QBI limits and not structuring the side practice for qualification.
  • Ignoring state‑specific tax rules for medical professionals.

Conclusion

Running a side practice can raise your income substantially, but it also creates numerous tax responsibilities. Picking the proper entity, maximizing deductible expenses, monitoring SE tax, and employing retirement and health‑insurance tactics helps you preserve more earnings. Consistent work with a qualified tax professional and diligent recordkeeping form the foundation of sound tax planning for doctors with side practices. With the correct approach, you can dedicate yourself to quality care while reducing your tax load.

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